Our Services

Every omics layer,
expertly analysed

11 specialist omics services — each delivered with reproducible pipelines, publication-quality figures, and clear biological interpretation. For researchers, biotech startups, and clinical teams.

What we deliver

Proteomics Analysis
Mass Spectrometry
End-to-end LC-MS/MS proteomics for DDA and DIA acquisition modes. We handle everything from raw file processing to differential protein expression, functional annotation, and STRING protein network analysis. Suitable for plasma, tissue, cell lysate, and urinary proteomes.
What's included
Raw file QC & validationProtein identification & quantificationImputation & normalisationDifferential expression (limma)Volcano & heatmap figuresSTRING network analysisGO / KEGG pathway enrichment
Tools
MaxQuantDIA-NNlimmaPerseusSTRINGclusterProfiler
Lipidomics Analysis
LC-MS
Untargeted and targeted lipidomics workflows for plasma, urine, tissue, and cell-derived samples. Species-level lipid identification, class-level profiling, statistical modelling, and lipid pathway mapping. Includes urinary lipidomics capability.
What's included
Feature detection & peak alignmentLipid annotation (HMDB / LipidMaps)Class-level & species-level profilingStatistical analysis (volcano, PCA)Lipid pathway mappingPub-quality figures
Tools
LipidSearchXCMSLipidRHMDBLipidMaps
Genomics — WGS / WES / PGX
Next-Gen Sequencing
Whole-genome and whole-exome sequencing analysis using GPU-accelerated NVIDIA Parabricks for ultra-fast runtimes (<5 hours for full WGS). Includes variant calling, annotation, and pharmacogenomics star allele calling for clinical drug response profiling.
What's included
Alignment (Parabricks / BWA-MEM2)Variant calling (GATK HaplotypeCaller)SNP / Indel annotation (VEP)PGX star allele calling (PharmCAT)Ancestry PCAClinical variant interpretation
Tools
NVIDIA ParabricksGATK 4.4bcftoolsVEP 110PharmCATANNOVAR
Bulk Transcriptomics (RNA-seq)
RNA Sequencing
Bulk RNA-seq analysis from raw reads to biological insight. Includes alignment, quantification, differential expression, and pathway enrichment — with support for multiple experimental designs including paired samples, time series, and multi-group comparisons.
What's included
QC (FastQC / MultiQC)Alignment (STAR) & quantification (salmon)Differential expression (DESeq2 / edgeR)GSEA & pathway enrichment (GO/KEGG)Heatmaps, volcano, PCA figures
Tools
DESeq2edgeRSTARsalmonclusterProfiler
Single-Cell RNA-seq (scRNA-seq)
Single-Cell
Comprehensive scRNA-seq analysis from count matrices to biological interpretation. Cell type annotation using curated marker sets, trajectory inference, and differential abundance testing between conditions.
What's included
Ambient RNA removal & doublet detectionNormalisation & highly variable gene selectionUMAP & Leiden clusteringCell type annotationTrajectory inference (PAGA / Monocle)Differential abundance analysis
Tools
ScanpySeurat 5CellTypistMonocle 3scVI
Metagenomics & Microbiome Analysis
Microbiome
Shotgun metagenomics and 16S rRNA amplicon sequencing analysis. Taxonomic profiling from species to strain level, alpha and beta diversity analysis, differential abundance testing, and functional annotation.
What's included
Taxonomic profiling (species / strain level)Alpha diversity (Shannon, Simpson)Beta diversity (Bray-Curtis, UniFrac)Differential abundance (MaAsLin2)Functional annotation (HUMAnN3)16S DADA2 ASV calling
Tools
MetaPhlAn 4Kraken2DADA2MaAsLin2HUMAnN3
Metabolomics
LC-MS / GC-MS
Untargeted metabolomics from LC-MS and GC-MS data. Feature detection, peak alignment, PQN normalisation, metabolite annotation against HMDB and KEGG, and statistical analysis with pathway mapping.
What's included
Feature detection & alignmentMetabolite annotation (HMDB / KEGG)Statistical modelling (volcano, PCA)Pathway mapping (MetaboAnalyst)Pub-quality figures & annotated tables
Tools
XCMSMZmine 3MetaboAnalystHMDBKEGG
Epigenomics — ATAC-seq & ChIP-seq
Chromatin
Bulk ATAC-seq and ChIP-seq analysis including peak calling, signal heatmaps, differential chromatin accessibility, and transcription factor motif enrichment across multiple histone marks.
What's included
Alignment & peak calling (MACS3)Signal heatmaps (deepTools)Differential accessibility (DiffBind)TF motif enrichment (HOMER)Multi-histone mark comparison
Tools
MACS3deepToolsDiffBindHOMERChromVAR
Spatial Transcriptomics
Spatial
Multi-platform spatial transcriptomics analysis for Visium, MERFISH, CosMx, and Stereo-seq. Spatially variable gene detection, cell type deconvolution, and spatial cell communication analysis to reveal tissue architecture.
What's included
Platform QC & normalisationSpatially variable gene detectionCell type deconvolution (RCTD)Spatial cell communication (CellChat)Tissue architecture visualisation
Tools
SquidpyRCTDCellChatSeuratSpatialDE
Multi-Omics Integration
Integration
Joint analysis of multiple omics datasets to identify cross-layer biological signatures. MOFA+ latent factor analysis, DIABLO supervised integration, and cross-omics correlation analysis — ideal for precision medicine and biomarker discovery studies.
What's included
MOFA+ latent factor analysisDIABLO supervised integrationCross-omics Spearman correlationsJoint clustering & visualisationMulti-omics biomarker report
Tools
MOFA+DIABLOmixOmicsPythonR
Cancer Genomics & Data Analysis
Oncology
Specialised cancer genomics analysis including somatic mutation calling, tumour mutational burden (TMB), copy number variation (CNV), mutational signature analysis, and integration with clinical metadata for oncology research.
What's included
Somatic variant calling (tumour / normal)TMB & MSI estimationCopy number variation (CNV) analysisMutational signature decompositionDriver gene annotationClinical metadata integration
Tools
Mutect2CNVkitCOSMIC SigProfilerVEPmaftools

What you always receive

Publication-Quality Figures
High-resolution PNG and SVG figures (300 DPI) ready for journal submission or presentations.
Annotated Data Tables
CSV tables with all results — DE proteins, variants, marker genes — clearly annotated and formatted.
Full Written Report
A comprehensive PDF/Markdown report covering methods, results, interpretation, and next steps.
Reproducibility Bundle
Exact commands, conda environment file, and SHA-256 checksums on all inputs and outputs.
Revision Rounds
At least one full round of revisions included — we iterate until your results tell the full story.
Follow-Up Support
Post-delivery support for questions, additional plots, or follow-on analysis scoping.

Tell us about your dataset

We'll scope the right service, suggest the best tools, and give you a timeline and quote within 24 hours.

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